Rfam 12.0 non-coding RNA annotation
[+] hg38, mm10, ce10, galGal4, ci2, danRer7...
ERROR: ftp server response timed out > 1000000 microsec
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Principal Splice Isoforms APPRIS
Selects a single CDS variant for each gene as the 'PRINCIPAL' isoform based on the range of protein features.
[+] hg38, hg19, mm10, danRer10, rn6, susScr3...
Peptide evidences CNIO
Peptides detected from a re-analysis of multiple experiments and databases
Purple sea star Assembly Hub
This is the Assembly Hub of the purple sea star (Pisaster ochraceus, assembly 12Jun2017_28pcJ)
CESAR Gene Mappings
Human Exons mapped by CESAR
[+] bosTau7, ailMel1, allMis1, anoCar2, fr3...
IDEAS roadmap 20states
Roadmap Epigenomics 20 state genome segmentation using the IDEAS algorithm
DASHR v2.0 Hub
DASHR v2.0 Human small non-coding RNA data hub
"dbRIP: Database of Polymorphic and Species-specific Retrotransposons in Humans"
McGill EMC (CEEHRC)
McGill Epigenomics Mapping Centre, Montreal, Quebec, Canada
JASPAR 2018 TFBS
TFBS predictions for all profiles in the JASPAR CORE collection (2018)
[+] hg19, hg38, ce10, dm6, sacCer3, danRer10...
RIKEN FANTOM5 Phase1 and Phase2 data
[+] hg38, mm10, hg19, mm9, canFam3, rn6...
FANTOM5 CAGE RECLU DATA
RIKEN FANTOM5 CAGE clusters by RECLU
iPSCORE retinal pigment epithelium (RPE) epigenome
Blueprint Epigenomics Data Hub
ENCODE Analysis Hub
ENCODE Integrative Analysis Data Hub
Ensembl Regulatory Build
Evidence summaries and provisional results for the new Ensembl Regulatory Build
hg38, hg19, mm10
Translation Initiation Sites (TIS)
Translation Initiation Sites (TIS) track
Ultra conserved Elements in the Human Genome. Science 304(5675) pp.1321-1325 (2004)
CSHL Biology of Genomes meeting 2013 demonstration assembly hub
araTha1, braRap1, ricCom1
GTEx RNA-seq Signal Hub
RNA-seq read coverage in 53 tissues from GTEx V6 (7572 samples)
GTEx Analysis Hub
Allele-Specific Expression in 53 tissues from GTEx Analysis (NY Genome Center)
Mouse strain assemblies
Assembly and alignment data for 16 different mouse strains plus rat.
[+] mm10, rn6, 129S1_SvImJ, WSB_EiJ, AKR_J...
Primate x4 NeuroDiff and Human CRISPRa
RNAseq coverage tracks from 4 Primate neuro-differentiation assays and a human CRISPRa assay
hg19, panTro4, ponAbe2, rheMac8
WormBase nematode genomes
[+] brenneri, japonica, remanei, ovolvulus...
ERROR: TCP non-blocking connect() to lasallelab.genomecenter.ucdavis.edu timed-out in select() after 10000 milliseconds - Cancelling!
Couldn't open http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt Debug Help
[+] hg19, hg18, mm10, mm9, bosTau7, bosTau6...
DASHR small ncRNA Hub
DASHR Human small non-coding RNA data
GRC Genome Issues under Review
Genome Reference Consortium: Genome issues and other features
[+] hg38, hg19, mm10, mm9, danRer7, danRer10...
CPTAC Hub v1
Clinical Proteomic Tumor Analysis Consortium (CPTAC) Hub v1
ReMap Regulatory Atlas
ERROR: TCP non-blocking connect() to pedagogix-tagc.univ-mrs.fr timed-out in select() after 10000 milliseconds - Cancelling!
Couldn't open http://pedagogix-tagc.univ-mrs.fr/remap/hubDirectory/trackhub/hub.txt Debug Help hg38
Vista Browser Track Hub
hg19, mm9, mm10
Assemblies, SNV and CNV data for Saccharomyces cerevisiae strains of the Peterhof Genetic Collection
[+] sacCer3, 1B_D1606_spades, 15V_P4_spades...
Porcine DNA methylation
DNA methylation levels from 9 week old Landrace x Yorkshire crossbred pigs and cell line 3D4/2.
Hippocampal DNA methylation and gene transcription
Hippocampal DNA methylation and gene expression patterns in porcine biomedical models of cognitive development
Porcine DNA methylation and gene transcription
DNA methylation and gene expression levels for eight tissues from the adult female Duroc chosen for production of the swine reference genome.
Human cellular microRNAome
microRNA RNA-seq based data from 46 primary cell types and 42 cancer or immortalized cell lines.
Burgess Lab Zebrafish Genomic Resources
Comparative data and New chromosome assemblies for Falcon and Pigeon from Damas et al., 2016 Genome Research
colLiv2, galGal4, falPer2
Hundreds of analyzed methylomes from bisulfite sequencing data
[+] hg38, hg19, hg18, mm9, mm10, panTro2...
Comprehensive craniofacial research data from FaceBase.org
mm9, mm10, hg18, hg19
Promoterome CAGE and nucleosome positioning
Zebrafish promoterome based on Haberle et al. and Nepal et al.
Roadmap Epigenomics Integrative Analysis Hub
Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis
Roadmap Epigenomics Data Complete Collection at Wash U VizHub
Roadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis
C. elegans wild isolate assembly hub
Whole-Cell 454 Hela and K562 RNAseq
Epigenomic Data tracks from BCGSC, Vancouver, B.C.
Human Islet lncRNAs
Pancreatic islet long non coding RNA transcripts (Akerman et al 2016)
MGI Alleles and Phenotypes
Allele's and Phenotypes from the Mouse Genome Informatics (MGI) consortium
miRcode microRNA sites
Predicted microRNA target sites in GENCODE transcripts
Cohesin(Smc1)-associated chromatin interactions in murine embryonic stem cells
UMassMed H3K4me3 ChIP-seq data for Autistic brains
ChIP-seq data track HUBs from MSC cells from GSE79815
ERROR: Couldn't open https://biochem.wisc.edu/sites/default/files/labs/pike/genome-ucsc/GSE79815_MSC_HUB/hub.txt Debug Help mm9
Cotney Lab Human Craniofacial Epigenomics
Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health
Evolutionary protein-coding potential as measured by PhyloCSF
hg19, hg38, mm10, galGal4, dm6, ce11
Broad Improved Canine Annotation v1
Broad Institute CanFam3 Improved Annotation Data v1
Seq-data on mm9 NS5 cells
Set of sequencing data on mm9 NS5 cells
EPD Viewer Hub
Promoter specific experimental data and TSS annotation from the EPD database
[+] hg19, hg38, mm9, mm10, danRer7, rheMac8...
GeneHancer: genome-wide integration of regulatory elements and target genes in GeneCards
Cancer Genomics Tracks
TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC, MyCancerGenome.org, OncoKB
human p53 Binding And Expression Resource (BAER) hub
human p53 ChIP-seq coverage depth (tracks) & SISSRs peak calls with associated differential gene expression from published data as of May 2015
Umap and Bismap mappability
Uniquely mappable regions of genome and methylome
hg38, hg19, mm9, mm10
Breast Cancer lncRNA
Breast Cancer lncRNA PMID 26236012
Human cellular microRNAome barCharts
Evaluation of >10 billion small RNA-seq reads from 78 primary cell types and 42 cancer or immortalized cell lines from 3 main studies.
Croc and Bird Hub
Croc, Bird, and Archosaur Assembly Hub
[+] allMis2, Anc00, Anc01, Anc02, Anc03...
LIBD Human DLPFC Development
ERROR: Couldn't open https://s3.amazonaws.com/DLPFC_n36/humanDLPFC/hub.txt Debug Help hg19
DNA methylation, chromatin accessibility, and gene expression data from NeuN flow-sorted human brain samples
dan_rer ZGA Hub
UCSC Hub for transcripts detected via long-read seq in Zebrafish during ZGA
UniBind: A map of direct TF-DNA interactions from ChIP-seq and TF binding profiles
LNCipedia 5.2 - A comprehensive compendium of human long non-coding RNAs